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<h1 class="title">MarvinView User's Guide - Table Of Contents</h1>
<ul>
<li> <a href="../applications/install.html">Installation/System Requirements</a></li>
<li> <a href="../applications/msketch.html">Application Instructions</a></li>
<li> <a href="../licensedoc/index.html">License Management</a></li>
<li> <a href="view.html">Quick Help</a></li>
<li><a href="view-gui.html">Introduction to MarvinView and GUI Reference</a>
    <ul>
    <li><a href="view-gui.html#introduction">Introduction</a></li>
    <li><a href="view-gui.html#marvinview-gui">MarvinView GUI Reference</a>
         <ul>
	     <li><a href="view-gui.html#canvas">Canvas</a></li>
	     <li><a href="view-gui.html#menubar">Menu Bar</a></li>
	     <li><a href="view-gui.html#popup-menu">Pop Up Menu</a></li>
	 </ul></li>
    </ul></li>
<li><a href="view-basic.html">How to Use MarvinView Features</a>
     <ul>
     <li><a href="view-basic.html#loading">Loading Molecules into MarvinView</a></li>
     <li><a href="view-basic.html#save">Saving Molecules</a></li>
     <li><a href="view-basic.html#print">Printing Molecules</a></li>
     <li><a href="view-basic.html#edit">Editing Molecules</a>
     <ul>
        <li><a href="view-basic.html#edit.view">Editing Options in MarvinView</a></li>
        <li><a href="view-basic.html#edit.sketch">Editing in MarvinSketch</a></li>
        <li><a href="view-basic.html#edit.source">Editing Source</a></li>
     </ul></li>
     <li> <a href="view-basic.html#display-structure">Structure Display Options</a>
        <ul>
            <li><a href="view-basic.html#format">Molecule Format</a></li>
            <li><a href="view-basic.html#molcolor">Colors</a></li>
            <li><a href="view-basic.html#implicit-explicit-H">Implicit/Explicit Hydrogens</a></li>
            <li><a href="view-basic.html#error-hilight">Error Highlighting</a></li>
        </ul>
     </li>
     <li><a href="view-basic.html#preferences">Saving Display Options</a></li>
     <li><a href="view-basic.html#manipulate">Manipulating the Molecule</a></li>
     <li><a href="../datatransfer.html">Cut/Copy/Paste and Drag &amp; Drop Functionality</a></li>
     <li><a href="../sci/stereo-doc.html">Stereochemistry</a></li>
</ul>
</li>
<li><a href="../calculations/calculator-plugins.html">Calculator Plugins</a></li>

<ul>
	<li><a href="../calculations/elemanal.html">Elemental Analysis Plugin</a>
	<li><a href="../calculations/iupacnaming.html">IUPAC Naming Plugin</a>
	<li><a href="../calculations/protonation.html">Protonation</a>
	<ul>
		<li><a href="../calculations/protonation.html#pka">p<i>K</i><sub>a</sub> Plugin</a>
		<li><a href="../calculations/protonation.html#ms">Major Microspecies Plugin</a>
		<li><a href="../calculations/protonation.html#isopoint">Isoelectric Point Plugin</a>
	</ul>
	<li><a href="../calculations/partitioning.html">Partitioning</a>
	<ul>
		<li><a href="../calculations/partitioning.html#logp">log<i>P</i> Plugin</a>
		<li><a href="../calculations/partitioning.html#logd">log<i>D</i> Plugin</a>
	</ul>
        <li><a href="../calculations/chargegroup.html">Charge</a>
	<ul>
		<li><a href="../calculations/chargegroup.html#charge">Charge Plugin</a>
		<li><a href="../calculations/chargegroup.html#polarizability">Polarizability Plugin</a>
		<li><a href="../calculations/chargegroup.html#oen">Orbital Electronegativity Plugin</a>
	</ul>
	<li><a href="../calculations/isomers.html">Isomers</a>
	<ul>
		<li><a href="../calculations/isomers.html#tautomer">Tautomerization Plugin</a>
		<li><a href="../calculations/isomers.html#resonance">Resonance Plugin</a>
		<li><a href="../calculations/isomers.html#stereoisomer">Stereoisomer Plugin</a>
	</ul>
	<li><a href="../calculations/conformation.html">Conformation</a>
	<ul>
		<li><a href="../calculations/conformation.html#conformer">Conformer Plugin</a>
		<li><a href="../calculations/conformation.html#moldyn">Molecular Dynamics Plugin</a>
	</ul>
	<li><a href="../calculations/geometrygroup.html">Geometry</a>
	<ul>
		<li><a href="../calculations/geometrygroup.html#topolanal">Topology Analysis Plugin</a>
		<li><a href="../calculations/geometrygroup.html#geometry">Geometry Plugin</a>
		<li><a href="../calculations/geometrygroup.html#TPSA">Polar Surface Area Plugin (2D)</a>
		<li><a href="../calculations/geometrygroup.html#MSA">Molecular Surface Area Plugin (3D)</a>
	</ul>
        <li><a href="../calculations/markush.html">Markush Enumeration Plugin</a></li>
	<li><a href="../calculations/other.html">Other</a>
	<ul>
		<li><a href="../calculations/other.html#HBDA">Hydrogen Bond Donor-Acceptor Plugin</a>
		<li><a href="../calculations/other.html#huckel">Huckel Analysis Plugin</a>
		<li><a href="../calculations/other.html#refractivity">Refractivity Plugin</a>
	</ul>
        <li><a href="../calculations/Validations.html">Test Results</a></li>
	<li><a href="../calculations/references.html">References</a></li>
</ul>

<li><a href="../acknowledgements.html">Acknowledgements</a></li>
</ul>

<p>
<a href="../index.html">Marvin User's Guide</a>
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Copyright &copy; 1998-2010
<a HREF="http://www.chemaxon.com">ChemAxon Ltd.</a>
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<a HREF="http://www.chemaxon.com/marvin">http://www.chemaxon.com/marvin</a>
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